Package: HVT 24.9.1

"Mu Sigma, Inc."

HVT: Constructing Hierarchical Voronoi Tessellations and Overlay Heatmaps for Data Analysis

Facilitates building topology preserving maps for data analysis.

Authors:Zubin Dowlaty [aut], Mu Sigma, Inc. [cre]

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HVT.pdf |HVT.html✨
HVT/json (API)

# Install 'HVT' in R:

install.packages('HVT', repos = c('https://mu-sigma.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mu-sigma/hvt/issues

On CRAN:

6.34 score 3 stars 1 scripts 268 downloads 19 exports 84 dependencies

Last updated 15 days agofrom:19c46ee5fd. Checks:OK: 1 ERROR: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 08 2024
R-4.5-win	ERROR	Nov 08 2024
R-4.5-linux	ERROR	Nov 08 2024
R-4.4-win	ERROR	Nov 08 2024
R-4.4-mac	ERROR	Nov 08 2024
R-4.3-win	ERROR	Nov 08 2024
R-4.3-mac	ERROR	Nov 08 2024

Exports:clustHVT displayTable edaPlots getCellId getTransitionProbability hvq madPlot plotAnimatedFlowmap plotHVT plotModelDiagnostics plotNovelCells plotQuantErrorHistogram plotStateTransition reconcileTransitionProbability removeNovelty scoreHVT scoreLayeredHVT trainHVT VQ_codebookSplit

Dependencies:askpass class classInt cli cluster colorspace cpp11 crayon DBI dplyr e1071 expm fansi farver FNN generics gganimate ggforce ggplot2 glue gtable here hms igraph isoband jsonlite KernSmooth labeling lattice lifecycle lpSolve magrittr markovchain MASS Matrix mgcv munsell NbClust nlme openssl pillar pkgconfig plyr png polyclip prettyunits progress proxy purrr R6 rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel RcppTOML reshape2 reticulate rlang rprojroot RSpectra Rtsne s2 scales sf sp splancs stringi stringr sys systemfonts tibble tidyr tidyselect transformr tweenr umap units utf8 vctrs viridisLite withr wk

HVT: Collection of functions used to build hierarchical topology preserving maps

Zubin Dowlaty, Shubhra Prakash, Sangeet Moy Das, Shantanu Vaidya, Praditi Shah, Srinivasan Sudarsanam, Somya Shambhawi, Pon Anureka Seenivasan, Vishwavani, Bidesh Ghosh, Alimpan Dey

Rendered fromHVT.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2024-11-08
Started: 2023-10-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Performing Hierarchical Clustering Analysis	clustHVT
Table for displaying summary	displayTable
plots for data analysis	edaPlots
Creating Transition Probabilities list	getTransitionProbability
Generating flow maps and animations based on transition probabilities	plotAnimatedFlowmap
Plot the hierarchical tessellations.	plotHVT
Make the diagnostic plots for hierarchical voronoi tessellations	plotModelDiagnostics
Plot the identified outlier cell(s) in the voronoi tessellation map.	plotNovelCells
Make the quantization error plots for training and scoring.	plotQuantErrorHistogram
Creating State Transition Plot	plotStateTransition
Reconciliation of Transition Probability	reconcileTransitionProbability
Remove identified novelty cell(s)	removeNovelty
Score which cell each point in the test dataset belongs to.	scoreHVT
Score which cell and what layer each data point in the test dataset belongs to	scoreLayeredHVT
Constructing Hierarchical Voronoi Tessellations	trainHVT